The INCF Neuroinformatics blog
This summer, you can meet INCF at a number of conferences: HBM in Quebec, IBRO in Florence, CNS in Stockholm, and our own Neuroinformatics Congress in Boston.
This Saturday, June 25, our summer conference season starts in earnest, with our satellite workshop on Neuroimaging Data Sharing and Data Access in Quebec, just before the launch of HBM*2011. The workshop has been greeted with much interest and is full - close to 100 attendees - with a waiting list. The following week, June 26-30, we will be present as exhibitors at HBM*2011, in booth 104.
Two weeks later, July 14-18, we will exhibit at the 8th IBRO World Congress of Neuroscience in Florence. Since we have recently become a member of IBRO, we are looking forward to meeting the IBRO community. Come meet us in booth 35!
Less than a week after IBRO, the CNS*2011 conference opens its doors in our hometown Stockholm. We have an exhibitor table, we are organizing a workshop on Emerging standards in network modeling on July 27, and we are also one of the local co-organizers - you'll meet us in various places during the conference days July 23-28.
After these three events, it is a month to go to the great finale - our own Neuroinformatics Congress in Boston, September 4-6. We are actually starting a day early, September 3, with a workshop during the last day of the EMBC conference; Toward a Global Neuroinformatics Infrastructure which includes talks by four world leaders of neuroinformatics and a concluding panel discussion. The registration fee for this last day of EMBC will be significantly discounted for Neuroinformatics Congress attendees.
And then? We start looking forward to meeting you all at SfN*2011 in Washington DC in November, of course.
A “Python in Neuroscience” workshop will be organized as a satellite to EuroSciPy, in Paris at the Ecole Normale Supérieure on August 29-30.
EuroSciPy, the cross-disciplinary gathering focused on the use and development of the Python language in scientific research, is organized for the fourth year in a row, and is growing steadily. New for this year is the organization of two satellite conferences, centered around Python use in the physics and neuroscience communities.
The Python in Neuroscience workshop aims at bringing together researchers who develop software tools in different branches of neuroscience in order to share ideas, concepts, tools and to foster collaborative projects based on Python language. The organizers are asking for contributions in the form of a one page abstract, and submission is open until June 8.
Possible topics for contributions include large parts of the neuroinformatics field:
- tools for neural simulation
- electrophysiology data analysis
- data management and databasing in neuroimaging and neuroscience
- stimulus generation
- neuroimaging data processing
- workflows and pipelines for data processing
- massive computation facilities for simulation and data analysis in neuroscience
- visualization tools in neuroscience and neuroimaging
So why has the Python language reached such a prominent position in the neuroscience field? Dr. Raphael Ritz, INCF Scientific Officer and involved in the organization of the workshop, explains:
"Python is a simple yet powerful, fully object-oriented, open source scripting and programming language. Lead by the increased maturity of 'numpy' and 'scipy' in particular, it has become a serious competitor as a platform for scientific computing. Consequently, more and more neuroscience labs and projects are switching to Python for managing their computational tasks - be it data acquisition or analysis, stimulus generation or delivery, visualization or animation, modeling or simulation etc. Due to Python being open source and platform independent it is also easy to share code across laboratories and groups which has let to a flourishing ecosystem of libraries and tools tailored to tasks as found in doing neuroscience research."