Scientific publications
Publications sorted by research topic / INCF Program
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Digital Brain Atlasing |
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A multidimensional magnetic resonance histology atlas of the Wistar rat brain (2012)
G. Allan Johnson et al.
NeuroImage 62 (2012) 1848–1856
doi:10.1016/j.neuroimage.2012.05.041
- Digital Atlasing and Standardization in the Mouse Brain (2011). Hawrylycz M, Baldock RA, Burger A, Hashikawa T, Johnson GA, Martone M, Ng L, Lau C, Larsen SD, Nissanov J, Puelles L, Ruffins S, Verbeek F, Zaslavsky I, Boline J.
PLoS Comput Biol 7(2): e1001065.
http://dx.doi.org/10.1371/journal.pcbi.1001065 - Waxholm space: an image-based reference for coordinating mouse brain research (2010). Johnson GA, Badea A, Brandenburg J, Cofer G, Fubara B, Liu S, Nissanov J.
Neuroimage vol. 53(2):365-72.
http://dx.doi.org/10.1016/j.neuroimage.2010.06.067 - Waxholm Space: Integration of Developmental Mouse Brain Atlas Data (2010). Burger A, McLeod K, Baldock RA.
Technical Report
- Report on Digital Atlasing Standards in the Rodent Brain (Waxholm Space) (2009). Hawrylycz M, Boline J, Burger A, Hashikawa T, Johnson GA, Martone M, Ng L, Nissanov J, Puelles L, Ruffins S, Verbeek F, Zaslavsky I.
Available via Nature Precedings.
http://dx.doi.org/doi:10.1038/npre.2009.4000.1 - Workshop Report: 1st INCF Workshop on Mouse and Rat Brain Digital Atlasing Systems (2007).
Boline J, Hawrylycz M, Williams RW.
Available via Nature Precedings.
http://dx.doi.org/10.1038/npre.2007.1046.1
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Ontologies of Neural Structures |
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A strategy for building neuroanatomy ontologies (2012) Osumi-Sutherland, et al.
Bioinformatics (2012) 28 (9): 1262-1269
http://dx.doi.org/10.1093/bioinformatics/bts113 - Workshop report: 1st INCF workshop on Development of a Community-Based Neuroscience Encyclopedia (2012) Boline J, Lanyon L.
Workshop report
- An ontological approach to describing neurons and their relationships (2012) David J. Hamilton, Gordon M. Shepherd, Maryann E. Martone and Giorgio A. Ascoli
Frontiers of Neuroinformatics
http://www.frontiersin.org/Neuroinformatics/10.3389/fninf.2012.00015/full - Workshop Report: 1st INCF Workshop on Neuroanatomical Nomenclature and Taxonomy (2007). Bota M, Swanson L.
Available via Nature Precedings.
http://dx.doi.org/10.1038/npre.2008.1780.1
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Multiscale Modeling |
- The Connection-set Algebra - A novel formalism for the representation of connectivity structure in neuronal network models (2010) Mikael Djurfeldt
Neuroinformatics 2012 10:287-304
http://www.springerlink.com/content/m3l32745767047r3/fulltext.pdf - Run-Time Interoperability Between Neuronal Network Simulators Based on the MUSIC Framework (2010). Djurfeldt M, Hjorth J, Eppler JM, Dudani N, Helias M, Potjans TC, Bhalla US, Diesmann M, Hellgren Kotaleski J, Ekeberg Ö.
Neuroinformatics 8:43-60
http://dx.doi.org/10.1007/s12021-010-9064-z - MUSIC - Multi-Simulation Coordinator (2009). Ekeberg Ö, Djurfeldt, M.
Users Manual - Workshop Report: INCF Multiscale Modeling Meeting, India (IMMMI) (2009).
From the IMMMI meeting held in November 2009 at NCBS Bangalore.
IMMMI Report - Workshop Report: 1st INCF Workshop on Large-scale Modeling of the Nervous System (2006). Djurfeldt M, Lansner A.
Available from Nature Precedings.
http://dx.doi.org/10.1038/npre.2007.262.1
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Standards for Data Sharing |
- Data sharing in neuroimaging research (2012) Jean-Baptiste Poline, Janis L. Breeze, Satrajit Ghosh,Krzysztof Gorgolewski, Yaroslav O. Halchenko, Michael Hanke, Christian Haselgrove, Karl G. Helmer, David B. Keator, Daniel S. Marcus, Russell A. Poldrack, Yannick Schwartz, John Ashburner and David N. Kennedy
Frontiers in Neuroinformatics 2012;6:9. Epub 2012 Apr 5.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3319918/pdf/fninf-06-00009.pdf - Data sharing and publishing in the field of neuroimaging (2012) Janis L Breeze, Jean-Baptiste Poline and David N Kennedy.
GigaScience 212, 1:9
http://www.gigasciencejournal.com/content/1/1/9 - Oversight Committee Report for the Program on Datasharing (formerly Metadata) Standards (2010).
Report - Workshop Report: 1st INCF Workshop on Neuroimaging Database Integration (2007). Forsberg L, Roland P.
Available from Nature Precedings.
http://dx.doi.org/10.1038/npre.2008.1781.1 - Workshop Report: 1st INCF Workshop on Sustainability of Neuroscience Databases (2007). Van Horn J, van Pelt J.
Available from Nature Precedings.
http://dx.doi.org/10.1038/npre.2008.1983.1
Other publications
- Global neuroinformatics: the International Neuroinformatics Coordinating Facility (2007). Bjaalie JG, Grillner S.
J Neurosci 27(14):3613-5
http://dx.doi.org/10.1523/JNEUROSCI.0558-07.2007 - Our collected Workshop Reports
